The results of the latest rounds of CAPRI (Critical Assessment of Predicted Interactions) for targets 29-42 were evaluated at the Fourth CAPRI Evaluation Meeting in Barcelona on December 9-11, 2009 (http://mmb.pcb.ub.es/capri2009). According to the assessment, ClusPro outperformed the other 9 participating servers and 53 of the 63 participating predictor groups, all this using only the coordinates of component proteins and no literature or other data that were available to human predictors.
Please try ClusPro 2.0, the newer version of our server which has been extensively tested in the process of predicting the CAPRI targets. ClusPro 2.0 is available at http://cluspro.bu.edu/. ClusPro 2.0 uses our own FFT-based docking program PIPER rather than DOT and ZDOCK used in ClusPro 1.0, and includes a number of advanced options. However, DOT and ZDOCK are also excellent docking programs, and hence we continue the current ClusPro service.
No thanks, I will use ClusPro version 1.0